PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G190900.1
Common NamePHAVU_003G190900g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TCP
Protein Properties Length: 397aa    MW: 42688 Da    PI: 8.3195
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G190900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP132.93.1e-41732442129
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 
                         ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s +   
  Phvul.003G190900.1  73 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVPsql 163
                         789******************************************************************9998777777777755555666 PP

                 TCP  89 ........................................kaaksaa.kskksqksaasalnlakesr.akarararertrek 129
                                                                 +  + ++   + +++ ++s+l+l++ s  ++   r+r  t+++
  Phvul.003G190900.1 164 rssyfnpnfslqqrrtlfpgialssdtnptntstllnfqsN--NLNNsMLQAKPEAPSSTLDLSDTSAeESTLGRKRRPTEQD 244
                         66777888888888889999888888888888888877432..2222244444444555677766444233334444444443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.4E-4277244IPR005333Transcription factor, TCP
PROSITE profilePS5136927.92379133IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010029Biological Processregulation of seed germination
GO:0010229Biological Processinflorescence development
GO:0031347Biological Processregulation of defense response
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEGGDDLHHH HHHHRQNFPF QLLEKKEDQE PPSCSTSSPY PSLAISAEPS TSNSTRSNQL  60
AVVSEPANSK KPPPKRTSTK DRHTKVDGRG RRIRMPALCA ARVFQLTREL GHKSDGETIE  120
WLLQQAEPAV IAATGTGTIP ANFTSLNISL RSSGSSMSVP SQLRSSYFNP NFSLQQRRTL  180
FPGIALSSDT NPTNTSTLLN FQSNNLNNSM LQAKPEAPSS TLDLSDTSAE ESTLGRKRRP  240
TEQDISSSSQ HQMGSYLLQS SAGTIPASHA ANIWMVANSN SNQVMSGDPI WTFPPVNNSA  300
LYRGTMSSGL HFMNFPTPMA LLPSQQLGSS GIGAVGGSSN NNNNNNNNMN EGHLSMLAGL  360
SPYRPVIGVS ESQASGSQSH RGGPADDRHD TTSHHS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00396DAPTransfer from AT3G47620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155318.10.0hypothetical protein PHAVU_003G190900g
SwissprotQ93Z004e-65TCP14_ARATH; Transcription factor TCP14
TrEMBLV7CAU90.0V7CAU9_PHAVU; Uncharacterized protein
STRINGGLYMA05G01131.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21203280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.15e-50TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14